JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHPN2_chr19_32973592_33069888	0/0	a0013	686	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RIBC1_chrX_53417873_53436115	1/1	a0001	379	273	60	50	122	9	30	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	a0002	276	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	a0003	308	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	a0004	379	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC2_chr22_45408693_45437509	0/1	a0001	382	209	65	27	93	2	21	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	1/0	a0002	382	137	7	33	68	11	17	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0003	382	53	7	9	27	3	7	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0004	382	5	4	1	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0005	382	5	5	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0006	381	4	4	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0007	382	3	0	0	3	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0008	382	2	2	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0009	382	1	1	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0010	382	1	1	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0011	382	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0012	382	1	0	0	0	0	1	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0013	369	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	a0014	382	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIC1_chr9_5624107_5781557	1/1	a0001	1423	301	81	56	117	12	33	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0002	1423	14	2	0	12	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0003	1423	3	3	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0004	1423	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0005	1423	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0006	1423	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0007	1423	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0008	1423	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0009	1423	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0010	1423	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0011	1423	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0012	1423	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	a0013	1423	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC3_chr11_8101056_8174025	1/0	a0001	369	295	67	64	125	6	32	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0002	369	31	14	4	10	0	3	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0003	369	31	5	6	18	0	2	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0004	369	7	7	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/1	a0005	369	1	0	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0006	369	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0007	369	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0008	369	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0009	369	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	a0010	369	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC8A_chr11_202708_220113	1/1	a0001	531	213	70	43	57	11	30	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0002	530	210	26	33	130	3	18	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0003	531	3	0	3	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0004	530	2	0	2	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0005	531	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0006	530	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0007	526	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	a0008	530	1	0	1	0	0	0	copy fasta	RIC8A	chr11	202708	220113