JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIGI_chr9_32450302_32531196	0/0	a0006	925	5	5	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0007	925	2	0	0	0	0	2	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0008	925	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0009	925	1	0	0	0	0	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0010	925	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0011	925	1	0	1	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIIAD1_chr1_151716522_151734805	1/1	a0001	92	414	88	78	186	14	46	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	a0002	92	4	4	0	0	0	0	copy fasta	RIIAD1	chr1	151716522	151734805
RILPL1_chr12_123465054_123538719	1/1	a0001	403	175	59	48	24	18	24	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	a0002	403	31	26	5	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	a0003	403	2	2	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	a0004	403	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	a0005	403	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL2_chr12_123410039_123441684	1/1	a0001	211	384	87	78	159	18	40	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	a0002	211	1	1	0	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	a0003	211	1	0	0	1	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILP_chr17_1641150_1654866	0/1	a0001	401	309	54	53	141	18	42	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0002	401	24	16	0	7	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0003	401	14	14	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0004	401	5	1	2	0	0	2	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0005	401	3	0	3	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0006	401	3	3	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0007	401	3	0	0	3	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0008	401	2	2	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0009	401	2	2	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0010	401	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0011	401	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0012	401	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0013	401	1	0	1	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0014	401	1	0	1	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0015	401	1	0	0	0	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0016	401	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0017	401	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0018	401	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	a0019	401	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RIMBP2_chr12_130391133_130721299	1/1	a0001	1362	138	35	39	31	10	21	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0002	1362	17	14	3	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0003	1362	3	3	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0004	1362	3	3	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0005	1362	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0006	1362	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0007	1362	2	0	2	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0008	1362	2	0	2	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0009	1362	1	0	0	0	0	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0010	1362	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0011	1362	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0012	1362	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0013	1362	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0014	1362	1	0	0	1	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	a0015	1362	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299