JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIMBP3B_chr22_21378751_21394478	0/0	a0047	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0048	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0049	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0050	1639	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0051	1641	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0052	1639	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0053	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0054	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0055	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0056	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0057	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0058	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0059	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0060	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0061	1639	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0062	1639	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0063	655	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0064	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0065	1641	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0066	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0067	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0068	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0069	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0070	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0071	1639	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0072	1638	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0073	1639	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0074	1639	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0075	1639	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	a0076	655	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3C_chr22_21540666_21556461	0/0	a0001	1639	22	2	5	11	1	3	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0002	1638	22	4	6	10	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0003	1639	8	0	1	5	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0004	1639	8	0	2	6	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0005	1638	8	0	0	8	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0006	1639	7	0	0	5	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0007	1638	7	0	2	2	1	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0008	1639	5	0	3	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0009	1639	4	0	4	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0010	1639	4	2	1	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0011	1639	4	4	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0012	1639	4	0	0	2	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0013	1639	3	1	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0014	1639	3	0	1	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0015	1641	3	0	0	3	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0016	1639	3	0	1	1	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0017	1639	3	0	3	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0018	1639	2	0	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0019	1639	2	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0020	1639	2	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461