JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
RIMBP3C_chr22_21540666_21556461	0/0	a0021	1639	2	0	0	2	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0022	1639	2	0	0	2	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0023	1639	2	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0024	1640	2	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0025	1638	2	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0026	1638	2	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0027	1638	2	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0028	83	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0029	1641	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0030	1639	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0031	1639	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0032	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0033	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0034	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0035	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0036	1639	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0037	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0038	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0039	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0040	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0041	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0042	1639	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0043	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0044	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0045	1639	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0046	1639	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0047	1641	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0048	1639	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0049	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0050	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0051	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0052	1639	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0053	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0054	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0055	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0056	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0057	1641	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0058	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0059	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0060	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0061	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0062	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0063	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0064	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0065	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0066	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0067	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0068	1639	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0069	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0070	1639	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461