JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIMBP3C_chr22_21540666_21556461	0/0	a0071	1639	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0072	1639	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0073	1639	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0074	1638	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0075	1640	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0076	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0077	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0078	1638	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0079	1640	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0080	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0081	1638	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0082	1638	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0083	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0084	1638	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0085	1638	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0086	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0087	1638	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0088	1638	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	a0089	1639	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3_chr22_18600815_18616919	0/0	a0001	1639	7	3	3	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0002	1639	3	2	0	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0003	1639	3	3	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0004	1639	2	2	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0005	1639	2	1	1	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0006	1639	2	0	1	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0007	1641	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0008	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0009	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0010	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0011	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0012	1639	1	0	1	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0013	1641	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0014	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0015	1639	1	0	0	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0016	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	a0017	1639	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMKLA_chr1_42375792_42429232	1/1	a0001	391	351	92	58	144	15	40	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	a0002	391	3	0	2	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	a0003	391	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	a0004	391	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLB_chr12_8692991_8782191	1/1	a0001	386	282	72	60	104	8	36	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	a0002	386	9	8	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	a0003	386	2	1	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	a0004	386	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMOC1_chr5_41899344_41926636	1/1	a0001	294	316	94	71	99	16	34	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	a0002	294	1	0	1	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	a0003	294	1	0	0	1	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMS1_chr6_71881550_72408145	1/1	a0001	1692	130	44	35	15	6	28	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	a0002	1692	7	5	0	0	0	2	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	a0003	1692	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145