JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIMS1_chr6_71881550_72408145	0/0	a0004	1692	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	a0005	1692	1	0	0	1	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS2_chr8_103495610_104259430	1/1	a0001	1607	117	66	12	16	7	14	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0002	1607	34	8	4	10	3	9	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0003	1607	7	0	0	6	0	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0004	1607	3	0	0	3	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0005	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0006	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0007	1607	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0008	1607	1	0	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0009	1607	1	0	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0010	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0011	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0012	1607	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0013	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0014	1607	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	a0015	1607	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS3_chr1_40615680_40670682	1/1	a0001	308	362	83	77	147	14	39	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	a0002	308	9	9	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	a0003	308	2	0	0	0	0	2	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	a0004	308	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	a0005	308	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	a0006	308	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS4_chr20_44746808_44815546	1/1	a0001	269	382	94	72	152	14	48	copy fasta	RIMS4	chr20	44746808	44815546
RIN1_chr11_66325241_66341434	1/1	a0001	783	385	77	66	178	17	45	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0002	783	8	7	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0003	783	3	3	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0004	783	3	0	0	3	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0005	783	2	1	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0006	783	2	0	0	2	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0007	783	2	0	1	0	1	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0008	783	2	0	2	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0009	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0010	783	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0011	783	1	0	0	0	0	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0012	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0013	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0014	783	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0015	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0016	783	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0017	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0018	783	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0019	783	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0020	783	1	0	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	a0021	783	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN2_chr20_19753258_20007456	1/1	a0001	895	221	64	40	75	6	34	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0002	895	44	11	9	17	3	4	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0003	895	3	3	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0004	895	2	1	0	0	1	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0005	895	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456