JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIN2_chr20_19753258_20007456	0/0	a0006	895	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0007	895	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0008	895	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0009	895	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	a0010	895	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN3_chr14_92508781_92693994	0/0	a0001	984	73	7	9	47	3	7	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/1	a0002	984	51	21	13	8	2	6	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0003	984	42	7	7	26	0	2	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	1/0	a0004	985	28	6	3	13	0	5	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0005	984	28	5	1	17	1	4	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0006	985	23	9	9	2	1	2	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0007	985	19	1	9	1	1	7	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0008	985	11	4	1	3	2	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0009	985	10	0	3	0	2	5	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0010	984	10	1	6	0	2	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0011	984	9	9	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0012	984	5	0	2	0	0	3	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0013	985	4	4	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0014	984	4	4	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0015	985	2	0	1	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0016	984	2	0	0	2	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0017	984	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0018	984	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0019	984	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0020	984	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0021	985	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0022	984	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0023	984	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0024	984	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0025	985	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0026	984	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0027	985	1	0	0	0	0	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0028	984	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	a0029	985	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RING1_chr6_33203500_33217716	0/1	a0001	406	424	94	77	190	16	46	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	a0002	406	1	0	1	0	0	0	copy fasta	RING1	chr6	33203500	33217716
RINL_chr19_38862830_38883275	0/0	a0001	566	180	35	23	104	3	15	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0002	566	99	46	11	22	2	18	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	1/1	a0003	566	91	6	25	42	4	12	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0004	566	14	0	5	9	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0005	566	12	0	10	0	1	1	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0006	566	2	0	2	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0007	566	2	2	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0008	566	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0009	566	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0010	363	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0011	566	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0012	566	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	a0013	566	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINT1_chr7_105527201_105572677	1/1	a0001	792	299	58	61	137	9	32	copy fasta	RINT1	chr7	105527201	105572677