JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RINT1_chr7_105527201_105572677	0/0	a0002	792	61	27	15	4	6	9	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0003	792	2	1	1	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0004	792	2	2	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0005	792	1	0	1	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0006	792	1	0	0	0	0	1	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0007	792	1	0	0	0	1	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	a0008	792	1	0	0	1	0	0	copy fasta	RINT1	chr7	105527201	105572677
RIOK1_chr6_7384808_7423037	1/1	a0001	568	359	89	72	155	12	29	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0002	568	6	0	0	6	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0003	568	3	0	1	0	0	2	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0004	568	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0005	568	1	0	0	1	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0006	568	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0007	568	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0008	568	1	0	0	0	0	1	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	a0009	568	1	0	1	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK2_chr5_97155867_97188247	1/1	a0001	552	185	52	35	78	6	12	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0002	552	120	5	28	60	7	20	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0003	552	63	19	8	25	1	10	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0004	552	11	0	1	10	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0005	552	9	5	2	0	0	2	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0006	552	6	0	0	6	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0007	552	6	5	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0008	552	5	5	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0009	552	3	3	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0010	552	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	a0011	552	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK3_chr18_23448287_23488140	1/1	a0001	519	399	90	74	178	14	41	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	a0002	519	1	0	1	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	a0003	519	1	0	1	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	a0004	519	1	0	0	0	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOX1_chr14_73485933_73498394	0/0	a0001	641	135	34	31	48	3	19	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/1	a0002	641	96	14	19	52	2	8	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0003	641	92	10	10	61	5	6	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	1/0	a0004	641	77	12	20	27	4	13	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0005	641	11	11	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0006	641	4	4	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0007	637	3	3	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0008	641	2	0	2	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0009	641	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	a0010	641	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX2_chr3_97936818_97977431	1/0	a0001	465	185	66	36	53	9	20	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/1	a0002	465	168	21	32	88	8	18	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0003	465	10	10	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0004	465	2	0	2	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0005	465	1	0	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0006	465	1	0	0	0	1	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0007	465	1	0	0	1	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0008	465	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	a0009	465	1	0	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431