JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATOSB_chr9_35099117_35120862	1/1	a0001	538	411	87	66	200	15	41	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0002	538	7	3	3	0	1	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0003	538	3	0	0	3	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0004	538	2	0	2	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0005	538	2	2	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0006	538	2	0	0	0	0	2	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0007	538	1	0	0	1	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0008	538	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0009	538	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0010	538	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	a0011	542	1	0	1	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOX1_chr5_151737822_151763631	1/1	a0001	68	378	98	74	156	16	32	copy fasta	ATOX1	chr5	151737822	151763631
ATP10A_chr15_25673712_25868327	1/1	a0001	1499	77	21	10	27	5	12	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0002	1499	60	9	22	23	1	5	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0003	1499	34	5	15	8	2	4	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0004	1499	20	0	0	12	0	8	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0005	1499	15	0	1	14	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0006	1499	10	6	1	0	0	3	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0007	1499	8	7	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0008	1499	7	7	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0009	1499	5	1	0	3	1	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0010	1499	4	0	3	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0011	1499	4	2	0	0	2	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0012	1499	3	0	2	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0013	1499	3	0	0	0	0	3	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0014	1499	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0015	1499	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0016	1499	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0017	1499	2	0	0	2	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0018	1499	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0019	1499	2	0	1	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0020	1499	2	2	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0021	1499	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0022	1499	1	0	0	0	0	1	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0023	1499	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0024	1499	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0025	1499	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0026	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0027	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0028	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0029	1499	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0030	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0031	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0032	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0033	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0034	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0035	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0036	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0037	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0038	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327