JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIPK1_chr6_3063494_3120187	1/1	a0001	671	337	86	65	130	14	40	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	a0002	671	1	0	1	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	a0003	671	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	a0004	671	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK2_chr8_89752816_89796064	1/1	a0001	540	356	79	60	160	11	44	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	a0002	540	15	5	3	6	1	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	a0003	540	5	5	0	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	a0004	540	2	1	1	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	a0005	540	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	a0006	540	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK3_chr14_24331025_24344991	1/0	a0001	518	352	62	61	177	12	39	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0002	518	49	22	3	21	0	3	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/1	a0003	518	18	5	6	0	2	4	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0004	518	2	0	0	1	0	1	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0005	518	2	2	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0006	518	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0007	518	1	1	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0008	518	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0009	518	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	a0010	463	1	0	0	0	0	1	copy fasta	RIPK3	chr14	24331025	24344991
RIPK4_chr21_41734373_41772052	0/1	a0001	784	383	75	76	184	15	32	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0002	784	29	14	5	0	3	7	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	1/0	a0003	784	23	0	0	15	0	7	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0004	784	6	5	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0005	784	2	0	0	0	0	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0006	784	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0007	784	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0008	784	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0009	784	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	a0010	784	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPOR1_chr16_67523829_67551786	1/1	a0001	1219	193	80	43	35	8	25	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0002	1219	12	7	1	3	0	1	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0003	1219	3	2	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0004	1219	2	0	0	2	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0005	1219	2	1	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0006	1219	2	0	0	2	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0007	1219	1	1	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0008	1219	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0009	1219	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0010	1219	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0011	1219	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0012	972	1	1	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0013	1219	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0014	1219	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0015	1219	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	a0016	1219	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR2_chr6_24799284_24940960	1/1	a0001	1047	215	28	41	100	8	36	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0002	1047	62	19	13	26	1	3	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0003	1047	12	12	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0004	1047	7	7	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960