JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIPOR2_chr6_24799284_24940960	0/0	a0005	1047	6	0	3	2	1	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0006	1047	4	4	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0007	1047	3	3	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0008	1047	2	0	0	2	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0009	1047	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0010	1047	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0011	1047	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0012	1047	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0013	1047	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0014	1047	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0015	1047	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0016	1047	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0017	1047	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0018	1047	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0019	1047	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0020	1047	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0021	1047	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	a0022	92	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR3_chr20_50581108_50696542	0/0	a0001	950	181	49	39	70	3	20	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	1/1	a0002	950	76	11	20	28	5	10	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0003	950	5	4	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0004	950	3	0	0	3	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0005	950	2	2	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0006	950	2	0	0	2	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0007	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0008	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0009	950	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0010	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0011	950	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0012	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0013	950	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0014	950	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0015	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0016	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	a0017	950	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPPLY1_chrX_106895063_106908341	1/1	a0001	151	296	70	50	138	9	27	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	a0002	34	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY2_chr6_83848360_83862515	1/1	a0001	128	398	96	80	164	14	42	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY3_chr21_37001702_37024662	0/0	a0000	0	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	1/1	a0001	190	426	93	81	197	14	39	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	a0002	190	4	3	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	a0003	190	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	a0004	190	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	a0005	190	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIT1_chr1_155892808_155916349	1/1	a0001	219	342	96	62	126	16	40	copy fasta	RIT1	chr1	155892808	155916349
RIT2_chr18_42738227_43120685	1/1	a0001	217	240	74	46	92	6	20	copy fasta	RIT2	chr18	42738227	43120685
RITA1_chr12_113180721_113197368	1/1	a0001	269	375	77	67	169	15	45	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	a0002	269	4	4	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	a0003	269	3	1	1	0	1	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	a0004	269	1	0	0	0	0	1	copy fasta	RITA1	chr12	113180721	113197368