JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RLN3_chr19_14023148_14036551	0/0	a0003	142	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	a0004	40	1	0	1	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	a0005	142	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	a0006	142	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	a0007	142	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RMC1_chr18_23498511_23536822	1/0	a0001	657	409	90	70	196	12	40	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/1	a0002	657	1	0	0	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMDN1_chr8_86467349_86513686	1/1	a0001	314	311	71	51	143	11	33	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	a0002	314	53	20	11	15	1	6	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	a0003	314	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	a0004	314	1	1	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	a0005	314	1	0	0	0	0	1	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	a0006	270	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN2_chr2_37920287_38022744	1/1	a0001	410	310	70	68	131	15	24	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0002	410	5	5	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0003	410	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0004	410	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0005	410	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0006	410	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0007	410	1	0	0	0	1	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0008	410	1	0	0	1	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	a0009	410	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN3_chr15_40730887_40760254	1/1	a0001	470	397	85	66	183	14	47	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	a0002	470	3	0	2	0	0	1	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	a0003	470	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	a0004	470	1	1	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	a0005	470	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	a0006	470	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMI1_chr9_83975805_84009074	0/1	a0001	625	273	59	33	141	11	28	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	1/0	a0002	625	122	33	25	44	3	16	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0003	625	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0004	625	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0005	625	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0006	625	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0007	625	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0008	625	1	0	0	1	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0009	625	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0010	625	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	a0011	625	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI2_chr16_11340459_11356760	1/1	a0001	147	425	95	80	190	16	42	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	a0002	147	1	1	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMND1_chr6_151399762_151457126	1/0	a0001	449	265	70	48	114	11	21	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0002	449	90	10	10	64	0	6	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/1	a0003	449	28	4	8	4	3	8	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0004	449	5	5	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0005	449	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0006	449	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0007	449	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	a0008	449	1	0	0	0	0	1	copy fasta	RMND1	chr6	151399762	151457126
RMND5A_chr2_86715291_86783041	1/1	a0001	391	304	86	66	100	14	36	copy fasta	RMND5A	chr2	86715291	86783041