JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RMND5B_chr5_178126014_178155568	1/1	a0001	393	410	96	79	173	16	44	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	a0002	393	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	a0003	393	1	0	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RNASE10_chr14_20500537_20518884	1/1	a0001	216	367	70	82	159	14	40	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	a0002	216	19	12	1	0	2	4	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	a0003	216	6	5	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	a0004	216	3	3	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	a0005	216	1	0	0	1	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE12_chr14_20585073_20596376	1/1	a0001	147	481	94	88	236	16	45	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	a0002	147	1	0	0	0	0	1	copy fasta	RNASE12	chr14	20585073	20596376
RNASE13_chr14_21027818_21039807	1/1	a0001	156	458	96	77	221	18	44	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0002	156	9	3	4	0	0	2	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0003	156	4	0	0	4	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0004	156	2	0	0	2	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0005	156	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0006	156	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0007	63	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0008	156	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	a0009	156	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE1_chr14_20796228_20807844	1/1	a0001	156	449	97	82	211	12	45	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	a0002	156	1	1	0	0	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	a0003	156	1	0	0	1	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	a0004	156	1	0	0	0	0	1	copy fasta	RNASE1	chr14	20796228	20807844
RNASE2_chr14_20950487_20961436	1/1	a0001	161	408	79	76	195	14	42	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	a0002	161	1	0	0	1	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	a0003	161	1	1	0	0	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE3_chr14_20886385_20897348	0/0	a0000	0	1	1	0	0	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/1	a0001	160	279	25	64	152	11	26	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	1/0	a0002	160	141	54	16	56	5	9	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	a0003	160	1	0	0	0	0	1	copy fasta	RNASE3	chr14	20886385	20897348
RNASE4_chr14_20679560_20706216	1/1	a0001	147	402	94	78	179	13	36	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0002	147	63	1	6	43	3	10	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0003	147	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0004	147	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0005	147	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0006	147	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	a0007	147	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE6_chr14_20776268_20787467	1/1	a0001	150	331	90	62	137	13	27	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	a0002	150	133	8	20	80	5	20	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	a0003	150	2	0	0	1	0	1	copy fasta	RNASE6	chr14	20776268	20787467
RNASE7_chr14_21037362_21049233	0/1	a0001	156	397	69	81	200	16	30	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	1/0	a0002	156	72	18	6	29	2	16	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	a0003	156	7	7	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	a0004	156	4	4	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	a0005	156	2	1	1	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	a0006	156	1	1	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	a0007	156	1	0	0	1	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE8_chr14_21052822_21063455	0/0	a0001	154	231	38	38	119	12	24	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	1/1	a0002	154	213	57	44	78	6	26	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	a0003	154	2	2	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455