JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNASE8_chr14_21052822_21063455	0/0	a0004	154	1	0	0	1	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	a0005	154	1	1	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE9_chr14_20551093_20566047	0/1	a0001	204	264	12	49	149	13	40	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	1/0	a0002	204	135	15	28	84	5	2	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0003	204	57	49	5	1	0	2	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0004	204	7	6	1	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0005	204	6	5	1	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0006	204	3	3	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0007	204	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0008	204	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0009	204	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	a0010	204	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASEH1_chr2_3536430_3563333	1/1	a0001	286	403	96	68	175	18	44	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	a0002	286	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	a0003	286	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	a0004	286	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	a0005	286	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH2A_chr19_12801584_12818640	1/0	a0001	299	383	74	69	181	16	42	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/1	a0002	299	22	16	4	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	a0003	299	2	2	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	a0004	299	2	1	1	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	a0005	299	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	a0006	299	1	1	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	a0007	299	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2B_chr13_50904791_50961762	0/0	a0000	0	11	7	0	0	0	4	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	1/1	a0001	312	369	88	74	163	10	32	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	a0002	312	1	1	0	0	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	a0003	312	1	0	0	0	0	1	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	a0004	312	1	0	0	1	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	a0005	312	1	0	0	0	0	1	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2C_chr11_65712673_65725798	1/1	a0001	164	421	96	82	188	18	35	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	a0002	163	22	0	0	22	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	a0003	164	2	0	0	2	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	a0004	164	1	0	0	0	0	1	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEK_chr17_7007624_7019532	1/1	a0001	98	391	87	76	170	16	40	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	a0002	98	1	1	0	0	0	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEL_chr1_182568634_182594256	1/1	a0001	741	201	63	40	72	7	17	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0002	741	141	21	19	88	4	9	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0003	741	82	1	17	42	5	17	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0004	741	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0005	741	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0006	741	1	0	0	0	0	1	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0007	741	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0008	741	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0009	741	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0010	741	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0011	741	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0012	741	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	a0013	741	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASET2_chr6_166917113_166961550	1/1	a0001	256	318	83	56	122	13	42	copy fasta	RNASET2	chr6	166917113	166961550