JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNASET2_chr6_166917113_166961550	0/0	a0002	256	23	10	2	9	1	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	a0003	256	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	a0004	256	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	a0005	256	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	a0006	256	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RND1_chr12_48852145_48870870	1/1	a0001	232	400	88	74	180	16	40	copy fasta	RND1	chr12	48852145	48870870
RND2_chr17_43020231_43037041	1/1	a0001	227	320	84	57	131	8	38	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	a0002	227	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	a0003	227	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND3_chr2_150463195_150492667	1/1	a0001	244	420	96	70	188	18	46	copy fasta	RND3	chr2	150463195	150492667
RNF103_chr2_86598398_86628865	1/1	a0001	685	392	92	68	175	16	39	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	a0002	685	5	0	0	0	0	5	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	a0003	685	3	0	3	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	a0004	685	1	0	1	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	a0005	685	1	0	0	1	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF10_chr12_120529356_120582588	1/1	a0001	811	365	87	72	156	14	34	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	a0002	811	3	3	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	a0003	811	1	1	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	a0004	811	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	a0005	811	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	a0006	811	1	1	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF111_chr15_58982663_59102419	1/1	a0001	986	281	84	44	120	10	21	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0002	986	43	2	14	16	4	7	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0003	986	2	0	2	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0004	986	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0005	986	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0006	986	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	a0007	986	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF112_chr17_19406232_19422276	1/1	a0001	631	352	84	64	149	12	41	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	a0002	631	2	0	0	2	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	a0003	631	1	0	0	1	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	a0004	631	1	0	0	0	0	1	copy fasta	RNF112	chr17	19406232	19422276
RNF113A_chrX_119865475_119876733	1/1	a0001	343	302	76	46	135	13	30	copy fasta	RNF113A	chrX	119865475	119876733
RNF113A_chrX_119865475_119876733	0/0	a0002	120	1	0	0	1	0	0	copy fasta	RNF113A	chrX	119865475	119876733
RNF113B_chr13_98170785_98182269	1/1	a0001	322	375	63	68	183	18	41	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	a0002	322	62	25	6	24	0	7	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	a0003	322	13	7	1	5	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	a0004	322	8	0	0	8	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	a0005	322	1	1	0	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	a0006	322	1	0	1	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF114_chr20_49931397_49958885	1/1	a0001	228	424	87	74	209	14	38	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	a0002	228	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	a0003	228	1	1	0	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF115_chr1_145733868_145829095	1/1	a0001	304	272	76	54	102	14	24	copy fasta	RNF115	chr1	145733868	145829095
RNF11_chr1_51231273_51278447	1/1	a0001	154	274	80	36	116	12	28	copy fasta	RNF11	chr1	51231273	51278447
RNF121_chr11_71924046_72002597	1/1	a0001	327	254	90	38	90	8	26	copy fasta	RNF121	chr11	71924046	72002597
RNF122_chr8_33542754_33572128	1/1	a0001	155	359	88	64	150	12	43	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	a0002	155	1	0	0	0	0	1	copy fasta	RNF122	chr8	33542754	33572128
RNF123_chr3_49684557_49726529	1/0	a0001	1314	245	81	43	74	15	31	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0002	1314	15	0	6	5	2	2	copy fasta	RNF123	chr3	49684557	49726529