JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF123_chr3_49684557_49726529	0/0	a0003	1314	7	6	0	0	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0004	1314	7	0	7	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0005	1314	3	0	0	2	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0006	1314	2	0	0	2	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0007	1314	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0008	1314	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0009	1314	1	0	1	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0010	1314	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0011	1314	1	0	0	0	1	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0012	1314	1	0	0	0	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0013	1314	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0014	1314	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0015	1314	1	0	1	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	a0016	1314	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/1	a0017	1314	1	0	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF125_chr18_32013825_32078219	1/0	a0001	232	332	90	56	141	10	34	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/1	a0002	232	22	1	7	7	2	4	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	a0003	232	3	3	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	a0004	232	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	a0005	232	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF126_chr19_642526_668214	1/1	a0001	311	399	92	75	171	15	44	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0002	311	26	4	5	14	1	2	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0003	311	4	0	1	3	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0004	311	2	0	0	0	2	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0005	311	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0006	311	1	0	1	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	a0007	311	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF128_chrX_106721701_106802016	1/1	a0001	428	207	64	41	73	7	20	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	a0002	428	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	a0003	428	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF130_chr5_179950067_180076759	1/1	a0001	419	336	95	71	127	14	27	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	a0002	419	1	0	0	1	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	a0003	419	1	0	0	0	0	1	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	a0004	419	1	0	1	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	a0005	419	1	1	0	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF133_chr7_122692735_122704117	1/1	a0001	376	427	94	74	203	13	41	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0002	376	6	0	0	6	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0003	358	6	0	4	0	1	1	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0004	239	4	4	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0005	376	2	0	0	0	0	2	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0006	376	1	0	0	1	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0007	376	1	1	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	a0008	376	1	1	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF135_chr17_30966039_31004911	1/1	a0001	432	182	14	58	70	12	26	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0002	432	66	58	8	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0003	432	5	5	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0004	432	4	1	1	0	2	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0005	432	4	4	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0006	432	3	3	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	a0007	432	1	0	1	0	0	0	copy fasta	RNF135	chr17	30966039	31004911