JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF135_chr17_30966039_31004911	0/0	a0008	432	1	1	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF138_chr18_32086874_32136561	1/1	a0001	245	351	75	62	160	14	38	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	a0002	245	9	7	2	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	a0003	245	2	2	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF139_chr8_124469880_124493618	0/0	a0000	0	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	1/1	a0001	664	402	88	71	185	14	42	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	a0002	664	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	a0003	521	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	a0004	664	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	a0005	664	1	0	1	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	a0006	664	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF13_chr3_149808215_149967139	1/1	a0001	381	270	73	62	89	16	28	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0002	381	3	3	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0003	381	2	2	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0004	381	2	2	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0005	381	1	0	0	1	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0006	381	1	1	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	a0007	381	1	1	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF141_chr11_10506673_10546187	1/1	a0001	230	370	97	68	145	16	42	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	a0002	230	3	0	0	3	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	a0003	230	1	1	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF144A_chr2_6912412_7049179	0/1	a0001	292	259	82	56	77	13	30	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	1/0	a0002	292	49	10	12	21	1	4	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	a0003	292	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	a0004	292	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144B_chr6_18382350_18473870	1/1	a0001	303	384	90	82	150	18	42	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	a0002	303	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	a0003	303	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF145_chr5_159152409_159214553	1/1	a0001	663	393	77	74	184	16	40	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	a0002	663	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF146_chr6_127261864_127293562	1/1	a0001	359	370	87	61	162	14	44	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	a0002	359	5	5	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	a0003	359	2	1	1	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	a0004	351	1	1	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF148_chr7_122696668_122707922	1/1	a0001	305	421	91	80	195	12	41	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0002	305	3	0	0	3	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0003	305	2	2	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0004	305	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0005	305	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0006	305	1	1	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0007	305	1	0	0	0	0	1	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0008	305	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	a0009	305	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF149_chr2_101270601_101313701	0/0	a0001	400	181	18	31	94	13	25	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0002	400	139	39	23	63	2	12	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/1	a0003	400	46	30	8	0	1	6	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0004	400	4	4	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0005	400	3	0	2	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0006	400	1	0	0	0	0	1	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0007	400	1	0	0	1	0	0	copy fasta	RNF149	chr2	101270601	101313701