JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF149_chr2_101270601_101313701	0/0	a0008	400	1	0	0	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	1/0	a0009	400	1	0	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	a0010	400	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF14_chr5_141964105_141995292	1/1	a0001	474	280	88	79	59	12	40	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	a0002	474	2	1	1	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	a0003	474	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	a0004	474	1	0	0	1	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF150_chr4_140854807_141138469	1/1	a0001	438	170	62	36	38	10	22	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	a0002	438	8	7	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	a0003	438	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	a0004	438	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	a0005	438	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	a0006	438	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF151_chr16_1961856_1973949	1/1	a0001	245	397	81	77	174	17	46	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0002	245	17	12	0	4	0	1	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0003	245	7	4	2	0	0	1	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0004	245	3	0	0	3	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0005	245	2	0	0	2	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0006	245	2	0	0	0	0	2	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0007	245	1	0	0	1	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0008	245	1	1	0	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0009	245	1	0	1	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	a0010	245	1	0	0	0	1	0	copy fasta	RNF151	chr16	1961856	1973949
RNF152_chr18_61803067_61898007	1/1	a0001	203	308	85	51	128	14	28	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	a0002	203	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	a0003	203	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF157_chr17_76137474_76245493	1/0	a0001	679	221	79	51	62	8	20	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0002	679	4	4	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0003	679	2	0	2	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0004	679	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0005	679	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/1	a0006	679	1	0	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0007	679	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0008	679	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	a0009	679	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF166_chr16_88691501_88711408	1/1	a0001	237	439	98	86	187	18	48	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	a0002	237	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF167_chr17_4935268_4950222	1/1	a0001	350	429	89	77	200	14	47	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	a0002	350	7	3	4	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	a0003	350	1	0	0	0	0	1	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	a0004	311	1	0	1	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	a0005	350	1	0	0	1	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	a0006	350	1	0	0	1	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF168_chr3_196463783_196508768	1/0	a0001	571	204	60	27	91	7	18	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/1	a0002	571	118	15	39	34	11	18	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0003	571	7	7	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0004	571	6	0	0	2	0	4	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0005	571	4	3	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0006	571	3	3	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0007	571	2	2	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768