JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP10A_chr15_25673712_25868327	0/0	a0039	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0040	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0041	1499	1	0	0	1	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0042	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0043	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0044	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0045	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0046	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0047	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0048	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0049	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0050	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0051	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0052	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0053	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0054	1499	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0055	1499	1	0	0	0	1	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	a0056	1499	1	0	1	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10B_chr5_160558120_160857211	0/1	a0001	1461	156	44	30	50	6	25	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	1/0	a0002	1461	44	6	15	9	5	8	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0003	1461	5	5	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0004	1461	4	0	0	4	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0005	1461	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0006	1461	2	1	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0007	1461	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0008	1461	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0009	1461	2	2	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0010	1461	2	1	0	0	1	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0011	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0012	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0013	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0014	1461	1	0	0	0	0	1	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0015	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0016	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0017	1461	1	0	1	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0018	1461	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0019	520	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0020	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0021	1461	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0022	1461	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0023	1461	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0024	1461	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	a0025	1461	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10D_chr4_47480275_47598486	0/1	a0001	1426	75	14	11	42	2	5	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	1/0	a0002	1426	44	9	11	1	4	18	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0003	1426	28	15	3	7	0	3	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0004	1426	27	2	8	14	2	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0005	1426	26	0	1	22	2	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0006	1426	15	6	5	0	0	4	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0007	1426	12	0	0	12	0	0	copy fasta	ATP10D	chr4	47480275	47598486