JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF168_chr3_196463783_196508768	0/0	a0008	571	2	0	0	2	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0009	571	2	2	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0010	571	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	a0011	571	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF169_chr11_74743849_74847413	1/1	a0001	708	337	81	54	148	18	34	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0002	708	8	8	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0003	708	2	0	0	0	0	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0004	708	2	2	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0005	708	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0006	708	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0007	708	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0008	708	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	a0009	708	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF170_chr8_42848301_42901605	1/1	a0001	258	207	76	54	53	2	20	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	a0002	258	1	0	0	1	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF175_chr4_153705160_153765024	0/0	a0001	328	227	66	30	102	8	21	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0002	328	67	0	12	49	4	2	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0003	328	58	3	4	44	0	7	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0004	328	17	0	9	0	2	6	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	1/0	a0005	328	12	9	1	0	0	1	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/1	a0006	328	3	0	1	0	0	1	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0007	328	2	2	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0008	328	2	0	0	0	0	2	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0009	328	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0010	328	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0011	328	1	0	0	1	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0012	328	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0013	328	1	0	1	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	a0014	328	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF17_chr13_24759169_24884921	1/1	a0001	1623	212	47	29	100	7	27	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0002	1623	63	2	16	33	4	8	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0003	1623	40	22	13	0	1	4	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0004	1623	37	4	9	18	4	2	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0005	1623	35	0	3	31	0	1	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0006	1623	7	5	2	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0007	1623	4	3	1	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0008	1623	4	0	0	4	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0009	1623	4	0	0	4	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0010	1623	4	4	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0011	1623	4	4	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0012	1623	2	0	0	2	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0013	1623	2	2	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0014	1623	1	0	0	0	0	1	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0015	1623	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0016	1623	1	0	0	1	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0017	1623	1	0	0	1	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0018	1623	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0019	1623	1	0	1	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0020	1623	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	a0021	1623	1	0	0	0	0	1	copy fasta	RNF17	chr13	24759169	24884921