JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF180_chr5_64160843_64377869	1/1	a0001	592	227	66	51	69	11	28	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	a0002	592	19	6	10	0	1	2	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	a0003	592	1	0	0	1	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	a0004	428	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	a0005	592	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	a0006	592	1	0	1	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF181_chr2_85590745_85602708	1/1	a0001	153	274	41	73	106	13	39	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	a0002	153	122	55	5	57	1	4	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	a0003	153	1	0	0	1	0	0	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	a0004	153	1	0	0	0	0	1	copy fasta	RNF181	chr2	85590745	85602708
RNF182_chr6_13919952_13985310	1/1	a0001	247	355	92	58	158	8	37	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	a0002	247	1	0	0	0	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF183_chr9_113292093_113308376	1/1	a0001	192	260	49	62	114	11	22	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	a0002	192	171	36	13	96	3	23	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	a0003	192	5	1	1	2	0	1	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	a0004	192	2	2	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	a0005	192	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	a0006	192	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF185_chr22_31155182_31212019	1/1	a0001	192	378	86	70	168	14	38	copy fasta	RNF185	chr22	31155182	31212019
RNF186_chr1_19809029_19820283	1/1	a0001	227	317	71	54	144	14	32	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0002	227	146	25	23	81	3	14	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0003	227	7	0	1	1	1	4	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0004	227	3	0	2	1	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0005	227	1	0	0	1	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0006	227	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	a0007	227	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF187_chr1_228482382_228501188	1/1	a0001	126	420	98	80	188	14	38	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	a0002	126	2	0	0	2	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF19A_chr8_100252067_100314953	1/1	a0001	838	350	84	62	152	12	38	copy fasta	RNF19A	chr8	100252067	100314953
RNF19B_chr1_32931449_32969809	0/1	a0001	731	312	87	60	120	8	36	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	a0002	731	13	0	0	12	0	1	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	a0003	733	3	3	0	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	1/0	a0004	731	1	0	0	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	a0005	731	1	0	0	0	0	1	copy fasta	RNF19B	chr1	32931449	32969809
RNF207_chr1_6201119_6226299	1/1	a0001	634	185	25	36	93	8	21	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0002	634	71	1	16	38	7	9	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0003	634	42	33	3	4	0	2	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0004	634	32	19	0	8	0	5	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0005	634	17	11	3	3	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0006	634	4	0	0	4	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0007	634	4	0	2	0	1	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0008	634	3	0	0	3	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0009	634	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0010	634	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0011	634	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0012	634	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0013	634	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0014	634	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0015	634	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	a0016	634	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299