JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF208_chr9_137215259_137227240	1/1	a0001	261	389	93	78	156	18	42	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	a0002	261	1	1	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF20_chr9_101528853_101568344	1/1	a0001	975	398	84	80	176	16	40	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	a0002	975	4	4	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	a0003	975	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	a0004	975	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	a0005	975	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	a0006	975	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF212B_chr14_23232936_23278477	0/0	a0000	0	1	1	0	0	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	1/1	a0001	300	365	95	61	171	18	18	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	a0002	300	1	0	1	0	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	a0003	300	1	0	0	1	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212_chr4_1066478_1118564	1/1	a0001	297	389	82	76	180	7	42	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0002	297	5	5	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0003	297	4	0	0	4	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0004	297	3	1	1	0	1	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0005	297	2	0	0	0	0	2	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0006	297	1	0	1	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0007	297	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	a0008	297	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF213_chr17_80255852_80403794	1/0	a0001	5207	76	4	19	49	1	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0002	5207	42	2	14	13	0	13	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0003	5207	10	0	1	8	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0004	5207	6	0	0	6	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0005	5207	6	1	1	2	0	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0006	5207	6	1	2	1	0	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0007	5207	5	0	1	3	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0008	5207	5	5	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0009	5207	4	2	1	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0010	5207	4	4	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0011	5207	4	2	2	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0012	5207	4	0	4	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0013	5207	4	1	3	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0014	5207	4	4	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0015	5207	3	2	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/1	a0016	5207	3	0	1	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0017	5207	3	3	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0018	5207	3	3	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0019	5207	2	0	0	2	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0020	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0021	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0022	5207	2	1	0	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0023	5207	2	1	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0024	5207	2	0	0	2	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0025	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0026	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0027	5207	2	0	0	2	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0028	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0029	5207	2	0	2	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0030	5207	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794