JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF213_chr17_80255852_80403794	0/0	a0081	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0082	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0083	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0084	5207	1	0	0	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0085	5207	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0086	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0087	5207	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0088	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0089	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0090	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0091	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0092	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0093	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0094	5207	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0095	5207	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0096	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0097	5207	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0098	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0099	5207	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0100	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0101	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0102	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0103	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	a0104	5207	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF214_chr11_117227671_117291454	1/1	a0001	703	359	82	63	152	16	44	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	a0002	645	1	0	1	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF215_chr22_30373821_30392411	1/1	a0001	377	383	88	70	171	14	38	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0002	377	41	5	8	19	3	6	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0003	377	3	0	0	3	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0004	382	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0005	377	1	0	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0006	377	1	0	0	0	1	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0007	377	1	1	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	a0008	377	1	0	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF216_chr7_5615047_5786663	1/1	a0001	923	263	85	64	67	8	37	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0002	923	3	2	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0003	923	2	2	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0004	923	2	0	2	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0005	923	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0006	923	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0007	923	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	a0008	923	1	0	0	0	0	1	copy fasta	RNF216	chr7	5615047	5786663
RNF217_chr6_124957437_125097633	0/0	a0001	542	215	67	43	75	5	25	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	1/1	a0002	542	33	6	7	12	1	5	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0003	542	7	6	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0004	542	3	0	3	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0005	542	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0006	542	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0007	542	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0008	542	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633