JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF217_chr6_124957437_125097633	0/0	a0009	542	1	0	0	1	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0010	542	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	a0011	542	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF220_chr1_44400255_44656723	0/0	a0001	566	217	79	40	62	12	24	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	a0002	566	1	1	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF222_chr17_8385702_8402827	1/0	a0001	220	183	21	23	117	5	16	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	a0002	220	173	68	37	42	8	18	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/1	a0003	220	70	2	16	37	5	9	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	a0004	220	9	9	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	a0005	220	1	0	0	0	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF223_chr1_1065967_1079306	0/1	a0001	249	159	21	36	82	5	14	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	1/0	a0002	249	114	64	16	15	7	11	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0003	249	39	5	7	13	4	10	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0004	249	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0005	249	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0006	249	2	0	2	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0007	249	1	0	1	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0008	249	1	0	0	0	1	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0009	249	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0010	249	1	0	0	0	1	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0011	249	1	0	0	0	0	1	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	a0012	249	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF224_chr9_137222502_137234640	0/0	a0001	156	196	36	35	98	9	18	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	1/1	a0002	156	181	48	46	55	9	21	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0003	95	12	12	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0004	156	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0005	156	1	0	0	0	0	1	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0006	156	1	0	1	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0007	156	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	a0008	156	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF225_chr19_58390656_58402079	0/1	a0001	329	299	30	61	158	13	36	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	1/0	a0002	329	54	18	13	15	0	7	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0003	329	24	23	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0004	329	23	20	3	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0005	329	8	0	4	0	3	1	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0006	329	4	0	0	4	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0007	329	4	3	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0008	329	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0009	329	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0010	329	1	0	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0011	329	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0012	329	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	a0013	329	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF227_chr17_7908339_7921289	1/1	a0001	190	359	85	76	139	17	40	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	a0002	190	40	0	1	37	0	2	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	a0003	190	4	4	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	a0004	190	2	0	1	0	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	a0005	190	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF24_chr20_3922311_4020558	1/1	a0001	148	362	88	66	158	10	38	copy fasta	RNF24	chr20	3922311	4020558
RNF25_chr2_218658892_218677002	1/1	a0001	459	307	85	46	123	11	40	copy fasta	RNF25	chr2	218658892	218677002