JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF25_chr2_218658892_218677002	0/0	a0002	459	5	5	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0003	459	2	2	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0004	459	2	0	0	2	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0005	459	1	1	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0006	459	1	0	0	1	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0007	459	1	1	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	a0008	459	1	0	0	0	1	0	copy fasta	RNF25	chr2	218658892	218677002
RNF26_chr11_119329527_119342309	1/1	a0001	433	408	89	74	187	16	40	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	a0002	433	9	0	0	9	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	a0003	433	2	0	0	2	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	a0004	433	1	1	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	a0005	433	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	a0006	433	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF2_chr1_185040558_185107603	1/1	a0001	336	349	90	74	148	7	28	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	a0002	336	1	0	0	0	1	0	copy fasta	RNF2	chr1	185040558	185107603
RNF31_chr14_24142498_24165655	1/1	a0001	1072	388	89	72	157	18	50	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0002	1072	43	0	0	43	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0003	1072	7	6	1	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0004	1072	2	0	0	2	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0005	1072	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0006	1072	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0007	1072	1	0	1	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	a0008	1072	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF32_chr7_156635774_156682130	1/1	a0001	362	200	26	41	90	8	33	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0002	362	178	43	26	93	7	9	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0003	362	50	14	2	30	1	3	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0004	362	8	8	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0005	362	3	3	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0006	362	2	0	0	2	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0007	362	2	0	0	0	0	2	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0008	362	2	0	0	2	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0009	362	1	0	1	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0010	362	1	0	0	0	0	1	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	a0011	362	1	0	0	1	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF34_chr12_121395118_121429348	1/1	a0001	372	326	68	51	153	12	40	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	a0002	371	14	14	0	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	a0003	372	9	0	9	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	a0004	229	1	0	0	1	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF38_chr9_36331400_36405269	1/1	a0001	515	402	90	76	178	14	42	copy fasta	RNF38	chr9	36331400	36405269
RNF39_chr6_30065270_30080769	0/1	a0001	352	294	51	57	150	9	26	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0002	352	62	31	3	23	0	5	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0003	352	33	2	8	20	1	2	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0004	352	30	3	2	19	5	1	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0005	352	21	0	8	0	3	10	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0006	352	4	1	1	0	0	2	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0007	352	2	0	0	2	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0008	352	2	2	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0009	352	2	2	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	a0010	352	1	0	1	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF40_chr16_30757322_30781307	1/1	a0001	1001	228	70	58	62	12	24	copy fasta	RNF40	chr16	30757322	30781307