JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF40_chr16_30757322_30781307	0/0	a0002	1001	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	a0003	1001	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF41_chr12_56197179_56226922	1/1	a0001	317	333	86	58	153	12	22	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	a0002	317	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	a0003	317	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF43_chr17_58348676_58422534	1/0	a0001	783	77	27	9	32	2	6	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0002	783	69	8	13	36	2	10	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0003	783	53	10	2	23	3	15	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/1	a0004	783	28	14	7	4	1	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0005	783	24	1	4	19	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0006	783	18	2	12	0	3	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0007	783	15	0	0	15	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0008	783	14	2	7	5	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0009	783	13	7	3	0	1	2	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0010	783	12	1	10	0	0	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0011	783	5	2	1	2	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0012	783	4	0	1	0	2	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0013	783	3	3	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0014	783	2	0	0	0	0	2	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0015	783	2	2	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0016	783	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0017	783	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0018	783	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0019	783	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0020	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0021	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0022	783	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0023	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0024	783	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0025	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0026	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0027	783	1	0	0	0	0	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	a0028	783	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF44_chr5_176521712_176542402	1/1	a0001	432	432	97	80	194	16	43	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0002	432	5	0	0	4	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0003	432	2	0	0	2	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0004	432	2	2	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0005	432	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0006	439	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	a0007	432	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF4_chr4_2464106_2520857	1/1	a0001	190	376	92	64	156	18	44	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	a0002	190	2	2	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF5_chr6_32173405_32185793	0/1	a0001	180	442	97	79	203	16	46	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	a0002	180	5	1	1	3	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF6_chr13_26207775_26227314	1/1	a0001	685	353	60	61	173	15	42	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0002	685	27	23	4	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0003	685	20	3	5	10	0	2	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0004	685	5	2	1	1	1	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0005	685	2	2	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0006	685	1	0	1	0	0	0	copy fasta	RNF6	chr13	26207775	26227314