JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNF6_chr13_26207775_26227314	0/0	a0007	685	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0008	685	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0009	685	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	a0010	685	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF7_chr3_141733298_141752560	1/1	a0001	113	384	92	62	174	14	40	copy fasta	RNF7	chr3	141733298	141752560
RNF8_chr6_37348983_37399734	1/1	a0001	485	324	98	58	130	8	28	copy fasta	RNF8	chr6	37348983	37399734
RNFT1_chr17_59947240_59969740	1/1	a0001	435	329	85	60	142	4	36	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	a0002	435	4	0	0	4	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	a0003	435	2	2	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	a0004	435	1	1	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT2_chr12_116733315_116858631	1/1	a0001	444	264	92	42	89	2	37	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	a0002	444	3	0	0	3	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	a0003	444	1	0	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNGTT_chr6_88604897_88968618	1/1	a0001	597	219	78	42	66	9	22	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	a0002	597	1	0	0	0	1	0	copy fasta	RNGTT	chr6	88604897	88968618
RNH1_chr11_489515_512242	0/0	a0001	461	336	85	48	150	14	39	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0002	461	21	6	10	0	0	5	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/1	a0003	456	20	0	16	0	2	1	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0004	461	3	0	2	0	0	1	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0005	461	3	3	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0006	461	1	0	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0007	298	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0008	461	1	0	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	a0009	461	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNLS_chr10_88279102_88588318	0/0	a0001	342	139	24	38	55	5	17	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0002	342	87	16	18	36	8	9	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0003	342	2	2	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0004	342	1	1	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0005	342	1	1	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0006	342	1	0	0	1	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	a0007	342	1	0	0	0	1	0	copy fasta	RNLS	chr10	88279102	88588318
RNMT_chr18_13721673_13769556	1/1	a0001	476	368	83	70	157	14	42	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	a0002	476	3	3	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	a0003	476	2	0	0	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	a0004	476	2	2	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	a0005	476	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNPC3_chr1_103520699_103560239	1/1	a0001	517	369	94	77	148	16	32	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	a0002	517	1	0	1	0	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPEPL1_chr2_240563484_240586372	1/1	a0001	725	396	97	77	162	14	44	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	a0002	722	3	3	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	a0003	725	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	a0004	725	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	a0005	725	1	0	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEP_chr1_201977648_202011143	1/0	a0001	650	284	75	66	111	7	24	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/1	a0002	650	158	17	15	94	9	22	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	a0003	650	4	4	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	a0004	650	4	1	3	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	a0005	650	2	2	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	a0006	650	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	a0007	650	1	0	0	1	0	0	copy fasta	RNPEP	chr1	201977648	202011143