JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RNPS1_chr16_2248120_2273126	1/1	a0001	305	372	91	69	154	14	42	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	a0002	305	1	1	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	a0003	305	1	0	1	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RO60_chr1_193054612_193096219	1/1	a0001	538	331	86	57	140	14	32	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	a0002	538	2	0	2	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	a0003	538	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	a0004	538	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	a0005	538	1	0	1	0	0	0	copy fasta	RO60	chr1	193054612	193096219
ROBO1_chr3_78592239_79772998	0/0	a0001	1651	37	29	6	0	0	2	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	a0002	1651	3	3	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	a0003	1651	3	3	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	a0004	1651	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO2_chr3_77035099_77654964	0/0	a0001	1491	147	50	26	48	6	17	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0002	1491	4	4	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0003	1491	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0004	1491	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0005	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0006	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0007	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0008	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0009	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	a0010	1491	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO3_chr11_124860432_124886471	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	1/1	a0001	1386	182	21	60	70	9	20	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0002	1384	76	39	7	20	3	7	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0003	1384	72	0	4	58	0	10	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0004	1384	30	26	3	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0005	1386	7	0	0	7	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0006	1384	6	1	2	0	1	2	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0007	1386	3	0	0	2	1	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0008	1386	3	0	0	3	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0009	1384	3	0	0	3	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0010	1386	2	0	0	0	0	2	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0011	1384	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0012	1386	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0013	1386	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0014	1384	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0015	1386	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0016	1386	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0017	1386	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0018	1384	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0019	1386	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0020	1386	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0021	1386	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0022	1002	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0023	1384	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0024	1386	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	a0025	1386	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO4_chr11_124878691_124902865	1/1	a0001	1007	206	22	56	91	10	25	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0002	1007	149	44	10	78	2	15	copy fasta	ROBO4	chr11	124878691	124902865