JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP10D_chr4_47480275_47598486	0/0	a0008	1426	11	10	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0009	1426	10	0	1	8	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0010	1426	8	3	3	0	2	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0011	1426	7	7	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0012	1426	5	5	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0013	1426	4	0	4	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0014	1426	4	0	2	0	0	2	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0015	1426	4	1	1	0	1	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0016	1426	4	1	2	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0017	1426	3	3	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0018	1426	3	0	2	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0019	1426	3	0	3	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0020	1426	2	1	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0021	1426	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0022	1426	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0023	1426	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0024	1426	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0025	1426	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0026	1426	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0027	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0028	1426	1	0	0	0	1	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0029	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0030	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0031	1426	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0032	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0033	1426	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0034	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0035	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0036	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0037	1426	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0038	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0039	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0040	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0041	1426	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0042	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0043	1426	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0044	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0045	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0046	1426	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0047	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0048	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0049	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0050	1426	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	a0051	1426	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP11A_chr13_112685038_112892168	0/1	a0001	1134	189	65	38	62	6	17	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	1/0	a0002	1134	32	2	7	8	3	11	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0003	1134	18	0	5	11	1	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0004	1134	3	3	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0005	1134	3	0	0	0	0	3	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0006	1134	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168