JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ROBO4_chr11_124878691_124902865	0/0	a0003	1007	23	18	4	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0004	1007	6	6	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0005	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0006	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0007	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0008	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0009	1007	1	0	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0010	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0011	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0012	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0013	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0014	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0015	1007	1	0	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0016	1007	1	0	0	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0017	1007	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0018	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0019	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	a0020	1007	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROCK1_chr18_20941906_21116813	1/1	a0001	1354	209	78	36	76	3	14	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	a0002	1354	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	a0003	1354	1	0	0	0	1	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	a0004	1354	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK2_chr2_11174759_11349636	1/0	a0001	1388	198	57	35	76	7	22	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/1	a0002	1388	118	25	18	56	7	11	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	a0003	1388	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	a0004	1388	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	a0005	1388	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	a0006	1388	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROGDI_chr16_4791968_4807633	1/1	a0001	287	399	86	70	177	18	46	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0002	287	8	7	1	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0003	287	3	0	0	3	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0004	287	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0005	287	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0006	287	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	a0007	287	1	0	1	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROM1_chr11_62608257_62620116	0/1	a0001	351	263	64	57	103	10	28	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	1/0	a0002	351	28	23	3	0	1	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0003	351	2	0	2	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0004	351	1	0	1	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0005	351	1	0	0	0	1	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0006	241	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0007	351	1	0	1	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0008	351	1	1	0	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0009	351	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	a0010	351	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROMO1_chr20_35694405_35705980	1/1	a0001	79	352	92	64	136	18	40	copy fasta	ROMO1	chr20	35694405	35705980
ROPN1B_chr3_125964178_125988454	1/1	a0001	212	415	90	79	185	15	44	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	a0002	212	13	0	0	13	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	a0003	212	8	0	0	8	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	a0004	212	6	0	0	6	0	0	copy fasta	ROPN1B	chr3	125964178	125988454