JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ROPN1B_chr3_125964178_125988454	0/0	a0005	212	4	0	3	0	1	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	a0006	212	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	a0007	212	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1L_chr5_10436879_10470026	1/1	a0001	230	363	82	67	158	14	40	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	a0002	230	5	4	1	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	a0003	230	3	3	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	a0004	230	2	0	0	2	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	a0005	230	1	1	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1_chr3_123964015_123997124	1/1	a0001	212	405	84	69	187	16	47	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0002	212	6	5	1	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0003	212	1	1	0	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0004	212	1	0	0	0	0	1	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0005	212	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0006	212	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	a0007	212	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROR1_chr1_63769017_64186498	0/0	a0001	937	83	58	13	4	1	7	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	a0002	937	12	2	6	0	3	1	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	a0003	937	1	0	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR2_chr9_91717601_91955228	0/0	a0001	943	91	33	14	33	5	6	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/1	a0002	943	53	9	8	31	1	3	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0003	943	29	9	5	7	1	7	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	1/0	a0004	943	26	11	5	4	2	3	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0005	943	8	8	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0006	943	4	3	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0007	943	3	0	0	3	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0008	943	2	0	0	2	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0009	943	2	0	0	2	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0010	943	1	0	0	0	1	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0011	943	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0012	943	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0013	943	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0014	943	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0015	943	1	0	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0016	943	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	a0017	943	1	0	0	0	0	1	copy fasta	ROR2	chr9	91717601	91955228
RORA_chr15_60483284_61234302	0/0	a0001	523	117	66	22	9	4	16	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	a0002	523	1	0	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORB_chr9_74492335_74698177	1/1	a0001	459	224	69	46	79	8	20	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	a0002	459	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	a0003	459	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORC_chr1_151801071_151836802	1/1	a0001	518	424	84	81	196	16	45	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	a0002	518	3	3	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	a0003	9	1	0	0	0	0	1	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	a0004	518	1	0	1	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	a0005	518	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
ROS1_chr6_117282353_117430942	1/0	a0001	2341	174	40	41	68	8	16	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0002	2341	24	1	8	12	1	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0003	2341	17	7	2	8	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0004	2341	10	2	0	5	1	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/1	a0005	2341	9	0	5	3	0	0	copy fasta	ROS1	chr6	117282353	117430942