JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ROS1_chr6_117282353_117430942	0/0	a0006	2341	9	1	4	3	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0007	2341	9	2	0	7	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0008	2341	8	2	1	1	1	3	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0009	2341	7	5	0	1	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0010	2341	5	1	0	4	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0011	2341	5	0	0	5	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0012	2341	3	0	1	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0013	2341	2	0	0	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0014	2341	2	0	1	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0015	2341	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0016	2341	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0017	2341	2	0	0	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0018	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0019	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0020	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0021	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0022	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0023	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0024	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0025	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0026	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0027	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0028	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0029	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0030	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0031	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0032	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0033	2341	1	0	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0034	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0035	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0036	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0037	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0038	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0039	2341	1	0	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0040	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0041	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0042	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0043	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0044	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0045	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0046	2341	1	0	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0047	2341	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0048	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	a0049	2341	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
RP1L1_chr8_10601349_10660143	0/0	a0001	2400	33	0	9	15	1	8	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0002	2417	31	0	5	23	1	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/1	a0003	2464	19	0	2	14	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0004	2432	18	1	7	10	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0005	2416	16	0	7	1	3	5	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0006	2400	10	10	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143