JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/0	a0007	2417	10	1	0	9	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0008	148	10	0	0	10	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0009	2416	8	8	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0010	2384	8	0	0	8	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0011	2400	8	0	0	8	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0012	2464	7	0	6	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0013	136	7	0	0	7	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0014	2448	5	1	3	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0015	2416	5	0	4	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0016	2416	4	4	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0017	2416	4	1	3	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0018	2409	4	0	2	1	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0019	2190	4	0	0	4	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0020	2480	4	0	0	4	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0021	2400	4	0	0	4	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0022	2450	3	3	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0023	2417	3	0	1	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0024	2448	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0025	2400	3	0	1	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0026	2400	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0027	2464	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0028	2377	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0029	2416	3	0	0	2	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0030	2401	3	0	3	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0031	2448	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0032	2464	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0033	2417	3	0	0	0	2	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0034	2416	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0035	2400	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0036	2400	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0037	2400	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0038	2416	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0039	2400	2	0	0	1	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0040	2400	2	0	0	1	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0041	2400	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0042	1956	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0043	2416	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0044	2432	2	0	0	0	2	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0045	2393	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0046	2400	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0047	2417	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0048	2464	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0049	2416	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0050	2400	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0051	2433	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0052	2464	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0053	2432	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0054	2400	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0055	2400	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0056	2400	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143