JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/0	a0157	2448	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0158	2464	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0159	2464	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0160	2448	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0161	2497	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0162	2400	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0163	2448	1	0	0	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0164	2400	1	0	0	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0165	2417	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0166	2416	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0167	2464	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0168	2400	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0169	2400	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0170	2400	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0171	2480	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0172	2432	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	a0173	2416	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1_chr8_54611096_54635834	1/1	a0001	2156	186	47	28	88	5	16	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0002	2156	126	3	26	79	3	15	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0003	2156	71	13	18	23	6	11	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0004	2156	9	4	4	0	0	1	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0005	2156	7	7	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0006	2156	6	0	0	6	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0007	2156	4	4	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0008	2156	3	1	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0009	2156	3	2	1	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0010	2156	2	0	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0011	2156	2	0	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0012	2156	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0013	2156	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0014	2156	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0015	1359	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0016	2156	1	0	0	0	0	1	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0017	2156	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0018	2156	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0019	2156	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0020	2156	1	0	1	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0021	2156	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	a0022	2156	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP2_chrX_46832043_46887358	1/1	a0001	350	269	75	45	114	10	23	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	a0002	350	2	0	0	0	1	1	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	a0003	350	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	a0004	350	1	1	0	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	a0005	67	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP9_chr7_33089797_33114404	1/0	a0001	221	355	92	60	160	10	32	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/1	a0002	221	87	2	16	50	4	14	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	a0003	221	1	0	0	0	0	1	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	a0004	221	1	0	0	0	0	1	copy fasta	RP9	chr7	33089797	33114404
RPA1_chr17_1825005_1905082	1/1	a0001	616	398	96	75	174	14	37	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	a0002	616	2	0	1	0	0	1	copy fasta	RPA1	chr17	1825005	1905082