JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPA1_chr17_1825005_1905082	0/0	a0003	616	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	a0004	616	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA2_chr1_27886524_27919575	1/1	a0001	270	361	85	76	134	18	46	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	a0002	270	3	3	0	0	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA3_chr7_7631518_7723607	1/1	a0001	121	308	86	60	112	8	40	copy fasta	RPA3	chr7	7631518	7723607
RPA4_chrX_96878908_96890467	1/1	a0001	261	163	24	32	70	9	26	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	a0002	261	155	53	21	75	4	2	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	a0003	261	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPAIN_chr17_5415182_5437877	0/0	a0001	219	195	18	31	121	5	20	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	1/1	a0002	219	195	71	47	46	6	23	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	a0003	219	3	0	0	1	1	1	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	a0004	219	3	3	0	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	a0005	219	2	0	2	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	a0006	219	2	0	2	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAP1_chr15_41512176_41549257	0/0	a0001	1393	128	11	26	70	3	18	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/1	a0002	1393	128	18	34	58	5	12	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0003	1393	71	13	2	53	0	3	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0004	1393	23	22	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0005	1393	14	0	4	7	2	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0006	1393	14	14	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0007	1393	11	2	5	0	4	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0008	1393	6	3	0	0	0	3	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0009	1393	5	5	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0010	1393	3	0	3	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0011	1393	2	2	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0012	1393	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0013	1393	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0014	1393	1	0	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0015	1393	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	1/0	a0016	1393	1	0	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0017	1393	1	0	0	0	0	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0018	1393	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0019	1393	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	a0020	1393	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP2_chr1_92294059_92407056	1/1	a0001	613	185	70	49	30	10	24	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	a0002	613	5	5	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	a0003	613	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	a0004	613	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP3_chr12_47656249_47711030	1/1	a0001	665	407	91	72	187	13	42	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0002	665	2	0	0	0	2	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0003	665	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0004	665	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0005	524	1	0	0	0	1	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0006	665	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	a0007	665	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPE65_chr1_68423822_68454954	1/1	a0001	533	431	87	73	209	17	43	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0002	533	12	11	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0003	533	2	0	0	2	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0004	533	2	0	0	0	0	2	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0005	533	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954