JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPE65_chr1_68423822_68454954	0/0	a0006	533	1	0	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0007	533	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0008	533	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0009	533	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0010	533	1	0	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0011	533	1	0	0	0	1	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0012	533	1	0	0	0	0	1	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	a0013	533	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPEL1_chr10_103240887_103253016	1/0	a0001	228	369	92	67	153	18	38	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	a0002	59	4	0	4	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	a0003	228	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	a0004	228	1	0	1	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPE_chr2_209997638_210027260	1/1	a0001	228	370	84	66	168	16	34	copy fasta	RPE	chr2	209997638	210027260
RPF1_chr1_84474266_84503352	1/0	a0001	349	176	56	30	67	4	18	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/1	a0002	349	143	16	26	79	4	17	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0003	349	21	11	6	0	1	3	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0004	349	4	4	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0005	349	3	0	0	0	1	2	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0006	349	1	0	1	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0007	349	1	0	1	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	a0008	349	1	1	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF2_chr6_110977038_111033263	1/1	a0001	306	345	63	65	159	10	46	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0002	306	6	5	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0003	306	4	4	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0004	306	2	2	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0005	306	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0006	306	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	a0007	303	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPGRIP1L_chr16_53593153_53708859	1/0	a0001	1315	195	61	42	71	6	14	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0002	1315	56	0	4	48	2	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/1	a0003	1315	42	7	3	23	2	6	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0004	1315	34	0	2	25	0	7	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0005	1315	20	11	0	0	0	9	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0006	1315	6	5	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0007	1315	2	0	0	2	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0008	1315	2	0	0	0	0	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0009	1315	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0010	1315	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0011	1315	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0012	1315	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0013	1315	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0014	1315	1	0	1	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	a0015	1315	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1_chr14_21275083_21356301	1/1	a0001	1286	141	28	23	67	7	14	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0002	1286	55	1	11	32	1	10	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0003	1286	38	15	6	10	1	6	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0004	1286	20	0	0	16	0	4	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0005	1286	17	14	2	0	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0006	1286	12	2	8	1	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0007	1286	11	1	2	0	2	6	copy fasta	RPGRIP1	chr14	21275083	21356301