JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPGRIP1_chr14_21275083_21356301	0/0	a0008	1286	4	4	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0009	1286	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0010	1286	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0011	1286	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0012	1286	3	1	2	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0013	1286	2	2	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0014	1286	2	2	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0015	1286	2	2	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0016	1286	1	0	0	0	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0017	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0018	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0019	1286	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0020	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0021	1286	1	0	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0022	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0023	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0024	1286	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0025	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0026	1286	1	0	0	1	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0027	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0028	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0029	1286	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0030	1286	1	0	0	1	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	a0031	1286	1	0	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGR_chrX_38279408_38332509	1/1	a0001	1152	105	22	23	36	7	15	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0002	1159	69	0	9	51	1	8	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0003	1159	29	9	0	19	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0004	1152	24	9	3	7	1	4	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0005	1148	8	0	4	0	2	2	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0006	1151	8	4	3	0	1	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0007	1152	6	6	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0008	1151	6	0	6	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0009	1152	5	4	1	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0010	1147	4	0	4	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0011	1152	4	3	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0012	1152	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0013	1192	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0014	1161	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0015	1144	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0016	1167	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0017	1158	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0018	1152	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0019	1152	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0020	165	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0021	1159	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0022	1142	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0023	1181	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0024	1151	1	0	0	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0025	1151	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0026	1144	1	0	1	0	0	0	copy fasta	RPGR	chrX	38279408	38332509