JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP11A_chr13_112685038_112892168	0/0	a0007	1134	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0008	1134	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0009	1134	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0010	1134	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0011	1134	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0012	1134	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0013	1134	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	a0014	1134	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11B_chr3_182788504_182926629	1/1	a0001	1177	309	76	49	149	13	20	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0002	1177	4	4	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0003	1177	3	0	0	3	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0004	1177	3	2	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0005	1177	2	0	1	0	1	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0006	1177	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0007	1177	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	a0008	1177	1	0	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11C_chrX_139721348_139938053	0/1	a0001	1129	199	54	35	84	7	18	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	a0002	1129	21	0	5	16	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	a0003	1129	10	8	2	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	1/0	a0004	1129	2	0	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	a0005	716	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	a0006	854	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP12A_chr13_24675408_24717472	1/1	a0001	1039	331	88	55	139	13	34	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0002	1039	27	0	7	11	1	8	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0003	1039	5	1	3	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0004	1039	4	3	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0005	1039	2	2	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0006	1039	2	1	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0007	1039	2	0	0	2	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0008	1039	2	0	2	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0009	1039	2	0	1	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0010	1039	1	1	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0011	1039	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0012	1039	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0013	1039	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	a0014	1039	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP13A1_chr19_19640198_19668676	1/1	a0001	1204	369	85	63	156	16	47	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0002	1204	4	4	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0003	1204	1	1	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0004	1204	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0005	1204	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0006	1204	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0007	1204	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0008	1204	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	a0009	1204	1	0	0	0	0	1	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A2_chr1_16980958_17016928	1/1	a0001	1180	349	89	56	156	10	36	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0002	1180	4	0	2	0	2	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0003	1180	4	3	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0004	1180	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0005	1180	2	0	1	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928