JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPGR_chrX_38279408_38332509	0/0	a0027	1159	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0028	1094	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0029	1151	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0030	1159	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0031	1150	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0032	539	1	0	0	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0033	1152	1	0	0	0	1	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0034	1152	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0035	600	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0036	833	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	a0037	1156	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPH3AL_chr17_207389_357807	0/1	a0001	315	124	29	23	51	11	9	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0002	315	2	0	0	0	0	2	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0003	315	2	2	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0004	315	1	0	0	0	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0005	315	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0006	315	1	0	1	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0007	315	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	a0008	315	1	0	0	0	1	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3A_chr12_112786748_112903881	1/1	a0001	694	244	73	48	91	8	22	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0002	694	8	3	0	5	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0003	694	4	4	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0004	694	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0005	694	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0006	694	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0007	694	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0008	694	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0009	694	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	a0010	694	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPIA_chr2_88686673_88755929	1/1	a0001	311	366	93	66	143	18	44	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	a0002	311	1	1	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	a0003	311	1	0	0	1	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPL10A_chr6_35463401_35475780	1/1	a0001	217	406	80	74	194	12	44	copy fasta	RPL10A	chr6	35463401	35475780
RPL10L_chr14_46646010_46656781	1/1	a0001	214	369	83	72	161	16	35	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0002	214	5	4	1	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0003	214	5	5	0	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0004	214	2	1	1	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0005	214	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0006	214	1	0	0	0	0	1	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0007	214	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0008	214	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	a0009	49	1	1	0	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10_chrX_154393377_154407332	1/1	a0001	214	181	12	35	93	12	27	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	a0002	214	94	63	20	7	1	3	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	a0003	213	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL11_chr1_23686806_23701835	1/1	a0001	178	387	92	72	171	12	38	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	a0002	178	1	0	0	1	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL12_chr9_127442674_127456406	1/1	a0001	165	399	87	70	184	16	40	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	a0002	165	1	1	0	0	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL13A_chr19_49482608_49497308	1/1	a0001	203	335	91	65	119	14	44	copy fasta	RPL13A	chr19	49482608	49497308