JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPL13A_chr19_49482608_49497308	0/0	a0002	203	1	0	0	1	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	a0003	203	1	0	1	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	a0004	203	1	1	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13_chr16_89555682_89569542	1/1	a0001	211	358	96	59	152	9	40	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	a0002	211	28	0	17	0	7	4	copy fasta	RPL13	chr16	89555682	89569542
RPL14_chr3_40452339_40473587	0/1	a0001	217	108	11	16	68	1	11	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0002	218	95	11	13	55	3	13	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0003	220	77	4	15	44	5	9	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0004	216	39	20	4	11	1	3	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	1/0	a0005	215	22	14	4	0	1	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0006	221	14	2	2	8	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0007	212	12	9	2	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0008	214	9	9	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0009	219	9	3	1	3	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0010	220	8	0	1	7	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0011	214	6	6	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0012	227	3	1	1	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0013	226	3	0	0	3	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0014	213	3	3	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0015	222	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0016	212	2	0	0	0	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0017	211	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0018	212	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0019	217	1	0	0	0	1	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0020	215	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	a0021	218	1	0	0	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL15_chr3_23912132_23925989	1/1	a0001	204	454	94	82	214	16	46	copy fasta	RPL15	chr3	23912132	23925989
RPL17_chr18_49483481_49497465	1/0	a0001	184	445	94	72	216	18	44	copy fasta	RPL17	chr18	49483481	49497465
RPL18A_chr19_17854910_17868319	0/0	a0001	176	408	94	78	172	18	46	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	a0002	176	1	0	0	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	a0003	176	1	0	0	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18_chr19_48610331_48624178	1/1	a0001	188	381	90	76	153	14	46	copy fasta	RPL18	chr19	48610331	48624178
RPL18_chr19_48610331_48624178	0/0	a0002	188	1	0	0	1	0	0	copy fasta	RPL18	chr19	48610331	48624178
RPL19_chr17_39195283_39209732	1/1	a0001	196	398	94	78	164	18	42	copy fasta	RPL19	chr17	39195283	39209732
RPL21_chr13_27246558_27261568	0/0	a0001	160	424	96	76	196	14	42	copy fasta	RPL21	chr13	27246558	27261568
RPL22L1_chr3_170859875_170875195	1/1	a0001	122	453	96	77	221	12	45	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	a0002	122	4	0	0	3	0	1	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	a0003	122	1	0	1	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22_chr1_6180020_6204595	1/1	a0001	128	371	98	68	151	14	38	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	a0002	128	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL23A_chr17_28714985_28729359	1/1	a0001	156	357	88	68	140	12	47	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	a0002	156	1	0	0	0	0	1	copy fasta	RPL23A	chr17	28714985	28729359
RPL23_chr17_38842860_38858721	1/1	a0001	140	418	90	78	196	14	38	copy fasta	RPL23	chr17	38842860	38858721
RPL24_chr3_101676091_101691718	1/1	a0001	157	444	92	72	224	14	40	copy fasta	RPL24	chr3	101676091	101691718
RPL26L1_chr5_172954424_172974771	1/1	a0001	145	377	96	70	149	16	44	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	a0002	145	8	0	0	8	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	a0003	85	1	0	0	1	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26_chr17_8372516_8388193	1/1	a0001	145	422	96	70	194	16	44	copy fasta	RPL26	chr17	8372516	8388193
RPL27A_chr11_8677792_8694872	1/1	a0001	148	443	97	76	208	16	44	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	a0002	148	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872