JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPL27A_chr11_8677792_8694872	0/0	a0003	148	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27_chr17_42993419_43007959	1/1	a0001	136	356	86	66	142	12	48	copy fasta	RPL27	chr17	42993419	43007959
RPL28_chr19_55380932_55397085	0/0	a0000	0	55	14	11	23	1	6	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	1/1	a0001	137	257	80	48	77	13	37	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	a0002	137	2	0	1	0	0	1	copy fasta	RPL28	chr19	55380932	55397085
RPL29_chr3_51988522_52000895	0/0	a0000	0	6	0	1	5	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	a0001	159	193	50	38	76	8	21	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/1	a0002	161	65	0	16	35	2	11	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	a0003	157	50	28	3	16	0	3	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	a0004	155	6	6	0	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	a0005	163	1	0	0	0	0	1	copy fasta	RPL29	chr3	51988522	52000895
RPL30_chr8_98036721_98050545	1/1	a0001	115	448	96	70	212	18	50	copy fasta	RPL30	chr8	98036721	98050545
RPL31_chr2_100997289_101012267	1/1	a0001	125	440	92	72	212	18	44	copy fasta	RPL31	chr2	100997289	101012267
RPL32_chr3_12829485_12846565	1/1	a0001	135	406	98	70	182	12	42	copy fasta	RPL32	chr3	12829485	12846565
RPL34_chr4_108615576_108630370	1/1	a0001	117	392	98	76	164	16	36	copy fasta	RPL34	chr4	108615576	108630370
RPL35A_chr3_197945190_197961610	1/1	a0001	110	373	89	66	160	14	42	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	a0002	110	1	1	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35_chr9_124852883_124866957	0/0	a0001	123	406	94	76	183	14	39	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	a0002	123	1	0	0	1	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	a0003	123	1	0	0	0	0	1	copy fasta	RPL35	chr9	124852883	124866957
RPL36AL_chr14_49613530_49625626	1/1	a0001	106	354	94	68	136	16	38	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36A_chrX_101386011_101401155	1/1	a0001	106	317	78	54	143	11	29	copy fasta	RPL36A	chrX	101386011	101401155
RPL36_chr19_5685295_5696875	1/1	a0001	105	392	86	84	160	14	46	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	a0002	105	2	2	0	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL37A_chr2_216493844_216509086	1/1	a0001	92	440	94	74	208	16	46	copy fasta	RPL37A	chr2	216493844	216509086
RPL37_chr5_40820262_40840222	1/1	a0001	97	440	96	74	204	16	48	copy fasta	RPL37	chr5	40820262	40840222
RPL38_chr17_74198678_74215655	1/1	a0001	70	446	98	82	198	18	48	copy fasta	RPL38	chr17	74198678	74215655
RPL39L_chr3_187115948_187144496	1/1	a0001	51	397	93	74	170	16	42	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	a0002	51	3	1	2	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39_chrX_119781504_119796630	0/0	a0001	51	320	80	56	143	11	30	copy fasta	RPL39	chrX	119781504	119796630
RPL3L_chr16_1938974_1959689	1/1	a0001	407	404	77	82	185	15	43	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0002	407	17	17	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0003	407	11	0	0	8	0	3	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0004	407	3	0	0	3	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0005	407	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0006	407	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0007	407	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0008	407	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0009	407	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0010	407	1	0	0	0	1	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0011	407	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0012	407	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0013	407	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0014	407	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0015	407	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	a0016	407	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3_chr22_39307882_39324623	1/1	a0001	403	375	97	82	131	16	47	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	a0002	403	3	0	0	2	0	1	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	a0003	403	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	a0004	403	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623