JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPL3_chr22_39307882_39324623	0/0	a0005	403	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	a0006	403	1	1	0	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL41_chr12_56111633_56122967	1/1	a0001	25	352	88	70	142	16	34	copy fasta	RPL41	chr12	56111633	56122967
RPL4_chr15_66493015_66509855	1/1	a0001	427	419	89	80	184	18	46	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	a0002	427	4	4	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	a0003	427	2	0	0	2	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	a0004	427	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	a0005	427	1	1	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	a0006	427	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL5_chr1_92827040_92846924	1/0	a0001	297	330	96	61	110	18	44	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	a0002	297	1	0	1	0	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL6_chr12_112400189_112414605	1/1	a0001	288	401	92	70	179	12	46	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	a0002	288	3	1	2	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	a0003	288	1	0	0	1	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	a0004	288	1	1	0	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL7A_chr9_133343218_133356426	1/1	a0001	266	436	98	76	196	18	46	copy fasta	RPL7A	chr9	133343218	133356426
RPL7L1_chr6_42874616_42894900	1/1	a0001	255	393	94	82	158	18	39	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	a0002	255	5	0	0	0	0	5	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7_chr8_73285242_73298633	1/1	a0001	248	447	96	76	213	18	42	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	a0002	248	1	0	0	1	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL8_chr8_144784769_144797390	1/1	a0001	257	413	94	83	182	18	34	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	a0002	257	1	0	1	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL9_chr4_39449124_39463922	0/0	a0001	192	446	94	80	214	14	44	copy fasta	RPL9	chr4	39449124	39463922
RPLP0_chr12_120191699_120206111	1/1	a0001	317	367	87	64	165	14	35	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	a0002	317	1	0	0	1	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	a0003	317	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	a0004	317	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	a0005	312	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	a0006	317	1	0	0	0	0	1	copy fasta	RPLP0	chr12	120191699	120206111
RPLP1_chr15_69447818_69461205	1/1	a0001	114	422	92	68	208	16	36	copy fasta	RPLP1	chr15	69447818	69461205
RPLP2_chr11_804967_817876	1/1	a0001	115	421	98	81	178	16	46	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	a0002	115	4	0	0	4	0	0	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	a0003	115	2	0	0	0	0	2	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	a0004	115	1	0	1	0	0	0	copy fasta	RPLP2	chr11	804967	817876
RPN1_chr3_128614969_128655818	1/1	a0001	607	381	86	76	155	16	46	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	a0002	607	6	6	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	a0003	607	1	0	0	1	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN2_chr20_37174330_37246619	1/1	a0001	631	331	75	63	144	12	35	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0002	631	4	0	0	1	0	3	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0003	631	2	0	0	2	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0004	631	2	0	0	2	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0005	631	2	2	0	0	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0006	631	2	0	1	0	0	1	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0007	631	1	0	0	0	0	1	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0008	631	1	1	0	0	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	a0009	631	1	0	0	1	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPP14_chr3_58301245_58325193	1/1	a0001	124	367	92	80	139	10	44	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	a0002	124	2	2	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	a0003	124	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP21_chr6_30340156_30351857	0/0	a0001	154	212	27	42	124	5	14	copy fasta	RPP21	chr6	30340156	30351857