JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPP21_chr6_30340156_30351857	0/0	a0002	154	148	26	30	72	6	14	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/1	a0003	154	101	35	11	27	7	20	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	a0004	154	5	4	1	0	0	0	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	a0005	154	1	0	0	1	0	0	copy fasta	RPP21	chr6	30340156	30351857
RPP25L_chr9_34605495_34617097	1/1	a0001	163	424	94	78	192	16	42	copy fasta	RPP25L	chr9	34605495	34617097
RPP25_chr15_74949418_74961772	1/1	a0001	199	422	92	74	198	18	38	copy fasta	RPP25	chr15	74949418	74961772
RPP30_chr10_90866974_90907191	1/1	a0001	268	437	97	74	208	14	42	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	a0002	268	2	0	2	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	a0003	268	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP38_chr10_15092355_15109257	1/1	a0001	283	244	12	55	136	10	29	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0002	283	85	55	14	8	2	6	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0003	283	21	21	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0004	283	13	1	0	12	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0005	283	12	4	2	5	0	1	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0006	283	3	0	1	0	2	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0007	283	2	0	0	2	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0008	283	1	1	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	a0009	283	1	0	0	1	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP40_chr6_4989717_5009037	1/1	a0001	363	308	68	77	121	14	26	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0002	363	21	7	3	1	0	10	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0003	363	12	5	2	4	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0004	363	8	8	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0005	363	7	6	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0006	363	1	0	0	1	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0007	363	1	0	0	1	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0008	363	1	0	0	0	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	a0009	363	1	0	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPRD1A_chr18_35984824_36072559	1/1	a0001	312	318	92	56	128	6	34	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1B_chr20_38028746_38097364	1/1	a0001	326	384	94	56	186	12	34	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD2_chr1_150359147_150481566	1/0	a0001	1461	287	82	50	109	10	35	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0002	1461	9	0	3	5	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/1	a0003	1461	8	0	6	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0004	1461	7	0	0	7	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0005	1461	2	0	2	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0006	1461	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0007	1461	1	0	1	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0008	1461	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0009	1461	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	a0010	1461	1	0	0	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRML_chr17_46973156_46984253	1/0	a0001	120	411	95	70	196	13	36	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/1	a0002	120	38	3	14	13	1	6	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	a0003	120	2	0	0	2	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	a0004	120	1	0	0	1	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRM_chr2_153472338_153483762	1/1	a0001	109	410	100	78	172	16	42	copy fasta	RPRM	chr2	153472338	153483762
RPS10_chr6_34412454_34431069	1/1	a0001	165	389	92	72	164	18	41	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	a0002	26	1	0	0	0	0	1	copy fasta	RPS10	chr6	34412454	34431069
RPS11_chr19_49491434_49504708	0/0	a0001	158	351	95	66	136	12	42	copy fasta	RPS11	chr19	49491434	49504708
RPS11_chr19_49491434_49504708	0/0	a0002	158	1	1	0	0	0	0	copy fasta	RPS11	chr19	49491434	49504708
RPS12_chr6_132809569_132822564	1/1	a0001	132	392	92	74	172	14	38	copy fasta	RPS12	chr6	132809569	132822564
RPS13_chr11_17069388_17082667	1/1	a0001	151	408	90	82	184	10	40	copy fasta	RPS13	chr11	17069388	17082667