JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPS6KA5_chr14_90842861_91065641	1/1	a0001	802	304	86	52	117	8	39	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	a0002	802	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	a0003	802	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA6_chrX_84053350_84193199	1/1	a0001	745	208	52	35	92	5	22	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	a0002	745	61	5	14	37	0	5	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	a0003	745	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	a0004	745	1	0	0	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	a0005	745	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KB1_chr17_59888121_59955574	1/1	a0001	525	304	86	54	126	2	34	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB2_chr11_67423494_67440401	1/1	a0001	482	177	19	22	96	9	29	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0002	482	175	71	37	56	5	6	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0003	482	16	0	2	13	0	1	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0004	482	2	0	2	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0005	482	2	0	0	2	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0006	187	1	0	0	1	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0007	482	1	1	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0008	482	1	1	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0009	482	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0010	482	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	a0011	482	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KC1_chr1_213046241_213279774	1/1	a0001	1066	286	75	50	128	12	19	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0002	1066	26	1	3	20	0	2	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0003	1066	10	10	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0004	1066	4	3	1	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0005	1066	2	2	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0006	1066	1	0	0	0	0	1	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	a0007	1066	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KL1_chr14_74898951_74928260	1/0	a0001	549	242	65	51	90	7	28	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/1	a0002	549	97	2	16	65	3	10	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0003	549	20	16	1	3	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0004	549	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0005	549	2	0	0	1	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0006	28	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0007	235	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0008	549	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0009	549	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0010	549	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	a0011	549	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6_chr9_19370715_19385236	1/1	a0001	249	422	100	76	180	16	48	copy fasta	RPS6	chr9	19370715	19385236
RPS7_chr2_3570260_3585920	1/1	a0001	194	430	100	86	180	16	46	copy fasta	RPS7	chr2	3570260	3585920
RPS8_chr1_44770540_44783779	1/1	a0001	208	402	92	68	180	16	44	copy fasta	RPS8	chr1	44770540	44783779
RPS9_chr19_54195858_54212647	0/1	a0001	194	457	90	88	212	16	50	copy fasta	RPS9	chr19	54195858	54212647
RPSA2_chr19_23758004_23833868	0/1	a0001	295	200	44	36	81	8	30	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0002	295	111	15	25	61	4	6	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0003	295	27	7	8	12	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	1/0	a0004	295	7	5	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0005	295	5	5	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0006	295	3	2	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0007	295	3	3	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0008	295	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868