JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPUSD3_chr3_9832849_9849008	0/0	a0004	343	3	0	0	3	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	a0005	343	3	3	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	a0006	343	2	0	0	2	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	a0007	343	1	0	0	0	0	1	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD4_chr11_126197096_126216650	0/1	a0001	377	223	26	36	123	9	28	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	1/0	a0002	377	184	64	43	49	7	20	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0003	377	3	3	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0004	377	2	2	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0005	377	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0006	377	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0007	377	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	a0008	377	1	0	1	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RRAD_chr16_66916685_66930535	1/1	a0001	308	374	88	68	160	14	42	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	a0002	308	11	11	0	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	a0003	308	1	1	0	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAGA_chr9_19044427_19056025	1/1	a0001	313	446	98	68	210	18	50	copy fasta	RRAGA	chr9	19044427	19056025
RRAGB_chrX_55712749_55763774	1/1	a0001	346	275	76	49	115	7	26	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	a0002	330	1	0	0	1	0	0	copy fasta	RRAGB	chrX	55712749	55763774
RRAGC_chr1_38833198_38864772	1/1	a0001	399	418	94	68	194	18	42	copy fasta	RRAGC	chr1	38833198	38864772
RRAGD_chr6_89359616_89417273	1/1	a0001	400	370	93	66	154	17	38	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	a0002	400	1	0	0	0	1	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	a0003	400	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAS2_chr11_14272922_14364183	1/0	a0001	204	279	78	44	106	16	34	copy fasta	RRAS2	chr11	14272922	14364183
RRAS_chr19_49630292_49645143	1/1	a0001	218	409	89	81	181	10	46	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	a0002	218	2	1	1	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	a0003	218	1	0	0	1	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	a0004	218	1	1	0	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	a0005	218	1	1	0	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRBP1_chr20_17608679_17687242	0/0	a0001	1570	57	2	10	31	2	12	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0002	1570	57	0	2	49	0	6	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0003	1570	22	1	0	16	0	5	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0004	1560	16	1	9	6	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0005	1570	12	11	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0006	1560	8	0	3	0	1	4	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0007	1560	8	1	2	0	2	3	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0008	1570	7	7	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0009	1580	7	7	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0010	1580	6	6	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0011	1580	6	0	1	4	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0012	1560	6	5	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0013	1560	6	0	4	0	1	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0014	1580	6	0	0	5	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0015	1580	6	5	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0016	1560	4	0	0	4	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0017	1580	4	4	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0018	1590	4	3	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0019	1570	4	0	1	3	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0020	1580	4	4	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0021	1560	4	0	0	4	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0022	1570	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242