JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RRBP1_chr20_17608679_17687242	0/0	a0023	1560	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0024	1570	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0025	1570	3	0	0	0	2	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0026	1570	3	0	3	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0027	1570	3	0	2	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0028	1570	2	2	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0029	1560	2	0	1	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0030	1560	2	0	1	0	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0031	1570	2	0	0	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0032	1570	2	0	1	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0033	1570	2	0	1	0	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0034	1560	2	0	1	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0035	1570	2	0	2	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0036	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0037	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0038	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0039	1570	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0040	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0041	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0042	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0043	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0044	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0045	1570	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0046	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0047	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0048	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0049	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0050	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0051	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0052	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0053	1580	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0054	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0055	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0056	1580	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0057	1580	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0058	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0059	1580	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0060	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0061	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0062	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0063	1570	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0064	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0065	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0066	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0067	1570	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0068	1580	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0069	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0070	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0071	1570	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0072	1580	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242