Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABHD3_chr18_21645901_21709774	0/0	a0003	409	1	0	0	1	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	a0004	320	1	0	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD4_chr14_22593300_22617963	1/1	a0001	342	423	95	74	184	18	50	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/0	a0002	342	1	1	0	0	0	0	copy fasta	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	1/1	a0001	349	275	77	49	109	6	32	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0002	349	3	2	1	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0003	349	2	2	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0004	349	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0005	349	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0006	349	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0007	349	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0008	349	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	a0009	349	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	1/1	a0001	337	298	94	67	87	12	36	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	a0002	337	2	0	0	0	2	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	a0003	337	1	0	1	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	a0004	337	1	0	0	1	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	1/1	a0001	439	321	67	63	137	12	40	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	a0002	439	62	29	7	24	2	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	a0003	439	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	a0004	439	1	0	0	1	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	a0005	439	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	1/1	a0001	481	356	75	64	171	12	32	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	a0002	481	1	1	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	a0003	481	1	0	0	1	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI2_chr2_203323394_203437169	1/1	a0001	542	320	80	60	140	10	28	copy fasta	ABI2	chr2	203323394	203437169
ABI3BP_chr3_100744156_100998421	1/1	a0001	1786	97	22	20	36	3	14	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0002	1786	54	11	15	21	2	5	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0003	1786	29	5	4	19	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0004	1786	13	0	5	2	2	4	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0005	1786	6	6	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0006	1786	5	0	0	4	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0007	1785	5	5	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0008	1785	3	2	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0009	1786	3	3	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0010	1785	2	2	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0011	1786	2	0	1	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0012	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0013	1785	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0014	1786	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0015	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0016	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0017	1785	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0018	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0019	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0020	1786	1	0	0	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0021	1786	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0022	1786	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0023	1786	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	a0024	1786	1	0	0	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421