JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATP13A2_chr1_16980958_17016928	0/0	a0006	1180	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0007	1180	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0008	1180	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	a0009	1180	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A3_chr3_194397677_194492002	1/1	a0001	1256	300	93	46	121	4	34	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	a0002	1256	2	0	2	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	a0003	1256	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	a0004	1256	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A4_chr3_193393967_193559895	1/1	a0001	1196	155	32	27	76	5	13	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0002	1196	123	34	24	44	6	15	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0003	1196	10	2	2	6	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0004	1196	4	0	1	0	0	3	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0005	1196	3	0	1	0	0	2	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0006	1196	1	0	0	0	1	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0007	1196	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0008	1196	1	0	0	0	0	1	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0009	1196	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0010	1196	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0011	1196	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	a0012	1196	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A5_chr3_193269789_193383753	0/1	a0001	1218	48	29	9	3	0	6	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0002	1218	47	2	15	23	1	6	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0003	1218	45	18	4	22	1	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0004	1218	25	5	2	14	2	2	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0005	1218	21	2	1	18	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0006	1218	21	1	4	10	0	6	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0007	1218	19	3	7	4	0	5	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	1/0	a0008	1218	12	1	1	6	1	2	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0009	1218	12	7	1	2	1	1	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0010	1218	3	3	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0011	1218	3	0	3	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0012	1218	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0013	1218	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0014	1218	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0015	1218	2	0	2	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0016	1218	2	0	2	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0017	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0018	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0019	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0020	354	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0021	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0022	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0023	1218	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0024	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0025	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0026	1218	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0027	1218	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0028	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0029	1218	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	a0030	1218	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753