JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RRBP1_chr20_17608679_17687242	0/0	a0073	1570	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/1	a0074	1560	1	0	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0075	1560	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0076	1560	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0077	1580	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0078	1580	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0079	1570	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0080	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0081	1570	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0082	1580	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0083	1570	1	0	0	0	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0084	1590	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	1/0	a0085	1410	1	0	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0086	1560	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0087	1480	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0088	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0089	1572	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0090	1560	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0091	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0092	1560	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0093	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0094	1560	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0095	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0096	1570	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	a0097	1580	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RREB1_chr6_7102961_7256980	1/0	a0001	1742	43	4	12	19	1	6	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0002	1742	43	7	10	20	0	6	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0003	1742	35	8	5	13	2	7	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/1	a0004	1742	33	10	9	4	5	4	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0005	1742	32	18	2	12	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0006	1742	20	0	0	20	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0007	1742	20	9	3	5	3	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0008	1742	10	1	4	1	3	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0009	1742	5	2	0	3	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0010	1742	5	1	2	1	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0011	1742	5	3	0	0	0	2	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0012	1742	4	4	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0013	1742	4	0	2	1	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0014	1742	3	3	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0015	1742	3	1	0	1	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0016	1742	2	2	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0017	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0018	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0019	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0020	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0021	1742	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0022	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0023	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0024	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0025	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980