JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RREB1_chr6_7102961_7256980	0/0	a0026	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0027	1742	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0028	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0029	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0030	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0031	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0032	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0033	1742	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0034	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0035	1742	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0036	1742	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0037	1742	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0038	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0039	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0040	1742	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	a0041	1742	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RRH_chr4_109822972_109849942	1/1	a0001	337	397	87	68	182	16	42	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	a0002	337	3	0	0	3	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	a0003	140	1	1	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	a0004	337	1	0	0	1	0	0	copy fasta	RRH	chr4	109822972	109849942
RRM1_chr11_4089799_4143932	1/1	a0001	792	364	87	69	158	8	40	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	a0002	792	2	2	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	a0003	792	1	0	1	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	a0004	792	1	1	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM2B_chr8_102199502_102243961	1/1	a0001	351	386	90	76	158	16	44	copy fasta	RRM2B	chr8	102199502	102243961
RRM2_chr2_10117739_10136414	1/1	a0001	389	357	94	73	138	16	34	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	a0002	389	1	0	1	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRN3_chr16_15055033_15099272	0/0	a0001	651	379	83	63	179	13	41	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0002	651	13	0	7	0	3	3	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0003	651	3	0	2	0	0	1	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0004	651	2	2	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0005	651	2	1	0	0	1	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/1	a0006	651	2	0	0	0	1	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0007	651	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0008	651	1	0	0	0	0	1	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0009	651	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0010	651	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0011	651	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	a0012	651	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRP12_chr10_97351701_97406340	1/0	a0001	1297	140	67	11	54	2	5	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/1	a0002	1297	135	16	38	58	10	12	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0003	1297	98	12	18	53	4	11	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0004	1301	6	0	0	5	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0005	1297	5	0	1	1	0	3	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0006	1297	4	0	1	3	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0007	1297	3	0	0	3	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0008	1297	2	0	0	0	0	2	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0009	1297	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0010	1297	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	a0011	1297	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340